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Hi,
Thanks for your program. I have a question about the result.
This is my command and the result:
`perl Parsing-RepeatMasker-Outputs/parseRM.pl -i ../Genome.fasta.out -p
`
```
#nt_total_i…
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Hi, thank you very much for developing this software. I have some questions about its operation that I would like to ask.
My command is "python3 ~/MCHelper/MCHelper.py -r A -t 20 -l Eb_families.fa …
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Hi rmhubley,
I hope this email finds you well. I am currently facing a small issue while annotating repetitive sequences in my genome using RepeatMasker. The tbl file shows that my genome contains …
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Dear Shujun,
I am summarising TEs in three species and wonder whethter to include the Unknown results as Unknown TEs or any type of repeat region?
They are SO:0000657
http://sequenceontology.or…
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Dear @olivertam
Hi, this is a very good tool and I am already on my second recent study applying the tool. The tool I use to identify TEs for all my species (8 species) is EDTA (https://github.com…
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Hi @zhangrengang
The species I am studying (a kind of Rhododendron) does not have a reference genome. Now I want to know how to analyze the effect of transposons ((mainly LTR retrotransposons) on…
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Hi there,
I am trying to use a custom list of transposable elements that can be found here: https://github.com/bergmanlab/drosophila-transposons/tree/master/current. I used the [makeTEgtf](http://l…
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Hello shujun
LTR_Retriever is a great tool and we have used it a lot in our research recently. Based on LTR_Retriever we were able to develop some high-resolution IRAP molecular markers, and then …
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Hello Dr. Ou,
Thank you for the tool and tutorials! I have some questions about the outputs.
In the `colcen.fna.mod.LTR.intact.gff3` file, it showed that 1662 intact LTRs were detected (same numb…
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Hello,
I am rerunning the last push in the same folder and get errors, here is the STDOUT and STDERR
This is a follow-up of this issue:
https://github.com/oushujun/EDTA/issues/10
```
./EDTA/ED…