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Thank you for this very useful tool! I have been using it for DNA metabarcoding of analysis of several markers (e.g. COI, trnl, and 16S) with eDNA samples in multiplex reactions and has proved great. …
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### Contact details
jungbluth.sean@gmail.com
### Dataset Title
Larval Fish Dietary DNA 2017-2019
### Describe your dataset and any specific challenges or blockers you have or anticipate.
I am wor…
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Hi,
first I'd like to thank you for a great package. I have been using it for years.
To the problem:
A simple dataset:
```
library(phyloseq)
data(enterotype)
sub_enter
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Hello,
First of all thanks for the code and package! It is something I've been thinking of and trying to do, and love to see there have been work done in the past.
For the input OTU table, I wa…
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Hello,
Thanks to develop this fantastic pipeline.
I'm looking forward to reading your paper!
I have amplicons from a nanopore metabarcoding run that did not span 16S rRNA gene but another gene.
I…
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### Contact details
tamara.rodriguez@ieo.csic.es
### Dataset Title
prokaryotes and phytoplankton from Iberian upwelling system
### Describe your dataset and any specific challenges or blockers you…
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Hi Derrick,
We talked about this topic during 2014 and I know you are working on it. I'm very excited to see you released a new kraken version! I really think kraken could be one of the best solution…
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Deagle, BE, Thomas, AC, McInnes, JC, et al. Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?. Mol Ecol. 2019; 28: 391– 406. https://doi.org/10.1111/me…
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I propose these changes to the run-information-batch-001.csv, run-information-batch-002.csv, run-information-batch-001_column-descriptions.csv and run-information-batch-002_column-descriptions.csv:
1…
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## GlobalFungi
Dataset link: https://globalfungi.com/
Region: Global
Taxon: Fungi
Type: occurrence
Why is this important: It represents the largest source of eDNA metabarcoding data on fungi with…