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Hello,
Thanks to develop this fantastic pipeline.
I'm looking forward to reading your paper!
I have amplicons from a nanopore metabarcoding run that did not span 16S rRNA gene but another gene.
I…
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Hi Derrick,
We talked about this topic during 2014 and I know you are working on it. I'm very excited to see you released a new kraken version! I really think kraken could be one of the best solution…
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For this week, pick two class mates' repositories, review, and post two issues in their repo that does one (or more) of the following:
1) ask questions that you might have
2) point out something you…
sr320 updated
3 years ago
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Hello Ben and team,
I am having trouble with the taxa assignation using dada2 and the MIDORI reference database. I've sequenced a Metazoan COI library based on Leray et al. 2013 primers targeting an …
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## GlobalFungi
Dataset link: https://globalfungi.com/
Region: Global
Taxon: Fungi
Type: occurrence
Why is this important: It represents the largest source of eDNA metabarcoding data on fungi with…
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I'm finding your code and KernelBiome very useful for modeling with metabarcoding data. I'd like to also incorporate other metadata about the samples in the model, such as sampling site as a category …
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Deagle, BE, Thomas, AC, McInnes, JC, et al. Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?. Mol Ecol. 2019; 28: 391– 406. https://doi.org/10.1111/me…
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Dear author,
Thanks and cheers for developing this package!
I have the question as to how to use the package to download complete mitochondrial genomes from the NCBI. This is because I am going …
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"ncbi_byname" works great most of the time (thanks!), but with limited testing fails about 5%. Which makes searching long lists of species cumbersome. It seems like there are some sequences in ncbii …
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## CALeDNA
Dataset link: https://ucedna.com/
Region: USA / California
Taxon: Eukaryotes
Type: occurrence
Why is this important: CALeDNA is a project / platform for citizen science eDNA metabarcod…