lentendu NetworkNullHPC issues

lentendu / NetworkNullHPC

OTU co-occurrence network inferrence base on null model for HPC

MIT License

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issues

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choosing null model using options from permatful in vegan

#25 timz0605 opened 3 months ago
1
-m columns option not working, Error in match.arg

#24 timz0605 closed 4 months ago
1
graph.data.frame() was deprecated in igraph 2.0.0.

#23 timz0605 opened 4 months ago
0
hdf5r vs. rhdf5

#22 timz0605 closed 4 months ago
1
OTU Table Read Abundance vs. Present/Absent Data

#21 timz0605 opened 4 months ago
6
Allow fine tuning of memory and CPU request

#20 lentendu opened 2 years ago
0
Avoid nodelist option for non-array jobs

#19 lentendu closed 2 years ago
0
typo

#18 frederic-mahe closed 3 years ago
0
Add clr transformation

#17 lentendu closed 3 years ago
0
Any possibilities to support qsub?

#16 jianshu93 opened 4 years ago
4
Add SLURM partition name option -p

#15 lentendu closed 4 years ago
0
Add an option to control the threshold of percent total OTUs included in the largest connected component from randomly permuted matrices

#14 lentendu closed 4 years ago
0
Option -m not correctly set in case

#13 lentendu closed 4 years ago
0
Null model 1 transpose the randomize matrix

#12 lentendu closed 4 years ago
0
Fix Slurm job names

#11 lentendu closed 4 years ago
0
Change OTU matrix cleaning order

#10 lentendu closed 4 years ago
0
Add an option to control hdf5 storage chunk size

#9 lentendu opened 4 years ago
0
Add an option to select the type of OTU matrix normalization

#8 lentendu closed 4 years ago
0
Avoid error if co-occurrence or co-exclusion network are empty, just report

#7 lentendu closed 4 years ago
1
Adapt requested time and memory to data size for threshold, edges and network steps

#6 lentendu closed 4 years ago
0
Integrate features

#5 lentendu closed 6 years ago
0
Include the median correlation value as third column in the edge list outputs

#4 lentendu closed 6 years ago
0
Integrate environmental matrix to observed correlations

#3 lentendu closed 6 years ago
0
Group spearman bootstraps for small matrices

#2 lentendu closed 6 years ago
0
Implements Grid Engine batch-queueing system

#1 lentendu closed 4 years ago
0