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Hi
I have noticed that `samtools consensus` command always uses 1 thread despite more (-@ 8) threads have been specified in the command. As shown in the processing time stats below, multiple thread…
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Thanks for this great package.
I got an error when try the test file
> 'checking modules
imports done
checking bam for expected tags
checking fasta
restarting pipeline in existing directory de…
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I want minimap2 + samtools integrated into dnadesign so that alignment can take place without going to C / bash.
https://biowasm.com/cdn/v3/minimap2/2.22
It can definitely be done, just will tak…
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Currently, we dont recommend but write in the README also about manual conda/mamba installation of the dependnecies. Two things:
* 1) I think the conda commands can be merged into one such as (why …
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my code
ohup tgsgapcloser --scaff R0301HifiHicOnt.fa --reads R0301.ONT.fa --racon ~/anaconda3/envs/genome/bin/racon --r_round 2 --output racon1 > pipe.log 2> pipe.err
erro.log:
/home/hjn/anaconda3…
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Hello everyone,
I am experiencing an issue with the new QUAST conda recipe. I saw the recipe was updated two months ago, even if QUAST version remains 5.2.0.
This is what is happening with the …
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Hello @rrwick,
I experienced some poor mapping performance with Minimap2 for reads simulated using the pacbio2016 (only changing depth, mean sequence identity, all other settings as default). I notic…
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When passed an index in an invalid format for the implicitly or explicitly chosen aligner, the exception message could additionally explain which index format is expected
As raised in https://githu…
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Within minimap2-rs, I'm getting [the following error](https://app.circleci.com/pipelines/github/bioconda/bioconda-recipes/126266/workflows/797d75f4-c39a-4b40-9135-2e867aaeb2de/jobs/204317?utm_campaign…
rob-p updated
2 months ago
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### Ask away!
Hi,
I think `pychopper` only trim and orient the full-length ONT-cDNA. Do we need trimming polyA tail before minimap2 alignment? I saw occassionally some misalign to genomic region.