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I am trying to identify miRNA from my data. In my data, I knew apriorly that sample contains novel miRNAs and I am also getting some of them when using mirdeep2/mirdeep* sequence aligner. But I am not…
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Dear Wang,
I tried to use function multi_Differ provided in R-package "anamiR" but the function does not generate any results!
library("anamiR")
## Use the internal dataset
data("mirna", packa…
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https://academic.oup.com/bioinformatics/article/36/9/2657/5701648
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Does the abundance of mature miRNAs equal MIR gene expression? Are methods used for normalization of Protein-Coding genes suitable for miRNA normalization? -> the mapped reads show a different pattern…
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@MartaLoBalastegui noticed that
> The miRNA final output matrix, which contains the counts for each isomir/miRNA (rows) and sample (cols), seems to be incompleted when working with an elevated numb…
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Hello,
Thanks for creating such a comprehensive database of miRNA-mRNA interactions. I was wondering if you could add some documentation regarding the scores for the prediction databases? I read y…
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Will this something you will be adding in the future?
I am currently working on this part.
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你好,我是刚刚进入这个领域的小白,你的论文和代码对我受益匪浅,但是当我尝试运行你的代码主函数的时候,他一直跳出
'''
2023-10-03,15:58:10 [INFO] Namespace(seed=2022, gpu=0, dataset='Dataset1', fold=1, data_dir='./datasets/', kg_type='KGET', aggregation_typ…
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I'm trying to lift-over miRNAs from miRbase, which seems to work well apart from one aspect: The primary transcript is shortend to the length of the mature miRNA.
For example, one entry in the `miR…
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Hi!
I tried to use miRge2.0 for microRNA sequencing data analysis. I used the command below and the following message came up:
`miRge2.0 annotate -s /path/to/input_file.fastq -d miRBase -pb /path/to…