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teacher
I obtained the corticalthickness.nii.gz file using **antsCorticalThickness. sh** and it has been converted to the MNI template space. Now, I want to extract the mean cortical thickness of bra…
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## Summary
Instead of FAST, use SynthSeg segmentations for 5TT/GMWMI generation
## Additional details
FAST isn't great, and we already have SynthSeg outputs from QSIPrep
## Next steps
Her…
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**Describe the bug**
This is prob. not a bug, but I was wondering about this recently & I´d great to get feedback and your ideas.
As far as I understood correctly, Schaefer atlases are directly…
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teacher
I obtained the corticalthickness.nii.gz file using antsCorticalThickness. sh and it has been converted to the MNI template space. Now, I want to extract the mean cortical thickness of brain r…
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There are the following atlas templates for monkeys:
+ MNI [Average](https://www.bic.mni.mcgill.ca/ServicesAtlases/Macaque) macaque
+ MNI [Rhesus](https://www.bic.mni.mcgill.ca/ServicesAtlases/Rhe…
lzehl updated
6 months ago
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Hello experts, I want to run qsiprep on infant data. It seems that I should use --infant with --dwi-only so that the infant template is used. However, what should the custom atlas’s images be register…
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Hello,
For some select filetypes, the intensity range is not identically maintained between mnc to nii.
Example files:
ftp://bigbrain.loris.ca/BigBrainRelease.2015/3D_Volumes/MNI-ICBM152_Space/mni_…
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This issue is open to discuss which behaviour should be implemented for the nidmviewer in the presence of images that are not in MNI space. See for example: http://neurovault.org/collections/1435/fsl_…
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Dear Developers,
currently I am aiming to reproduce the normalization steps in fmriprep (e.g. _desc-preproc_T1w.nii.gz -> 1_space-MNI152NLin6Asym_desc-preproc_T1w.nii.gz) with nitransforms. The big…
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This repository has an impressive number of atlases. I took a quick look at two of these atlases that were of particular interest, and it appears that both may be flipped left-right relative to an MN…