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Fine-graining is not implemented for system sized morphologies. It would be a good proof of concept to show that we can take a UA trajectory, add hydrogens, and run the relaxation workflow Matty descr…
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The capital Ɓ has the form of Ƃ in the original document, which is not the current standard form for capital for this letter in most languages but is still preferred for [Dan](https://en.wikipedia.org…
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Bluepysnap should be an agnostic tool to read Sonata. Currently it forces user to load morphologies via NeuroM which is redundant and too specific. What if user wants MorphIO? Besides we can't do the …
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Hi,
Thanks for the great work and for sharing the code. I was wondering how to retarget the model (without re-training) for humanoids with different body types (i.e. different arm lengths, mass, siz…
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This is on current master, perhaps properly loading these files depends on Arobr v0.6, but I thought I'd mention it anyway.
E.g.: `[error] NML file /home/brent/sync/julich/code/arbor-gui/data/c302-…
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For simple morphologies, each section/segment/compartment of the neuron can be given an explicit label. For detailed morphologies it is less easy/useful to address/label specific sections, with the ex…
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From Greg Cocks:
Based on a literature search, 25 correlations have been located and summarised in a crosswalk.
Task: Hydrologists in conjunction with the modelers to review these literature sea…
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It will take as input morphologies, and create an exemplar per mtype. Various variants should be possible, and some validation plots will be needed.
Current variants to be implemented:
- placehold…
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Brought to the attention of the Oncology WG by @mgurley :
[direct Teams link](https://teams.mic…
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When you download the genome file, it is expected to contain the complete list of morphologies. However, it appears that if a morphology is added and then deleted, it still remains in the list. Simila…