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Validating Crosslinking data:
- 211026EWas01_E1.mzML
- 211026EWas02_F1.mzML
- 211026EWas03_F2.mzML
- interact-1_2.ipro.mzid
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- Describe the issue or question:
Enabling writing sub-mzML fails with FragPipe v21 when the source MS data file is not an mzML file, but does work on v20.
The relevant snippet from the log file…
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@oruebel Yesterday we uploaded a file that was acquired on a MALDI LTQ/XL (Thermo) and had been converted to mzML using msconvert with default parameters. BASTet correctly identified the unique m/z v…
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Howdy all,
I am having some errors processing .mzml data converted from bruker .baf files.
the error I get no matter what task I run is:
Run failed, Exception: Object reference not set to an…
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## Cross-device link" error when running assemble
**Describe the bug**
When running the `pcpfm` tool, an OSError with code 18 occurs, indicating a "Cross-device link" error. This error arises when…
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Hi Vadim,
I am using DIANN 1.9 to quantify my 3227 MS files (converted to mzML) from Orbitrap Astral.
However, it failed to generate output tables and reports and exited as in the screenshot below. …
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Polarity information is usually present in imzML files, either in the ``, e.g.
```
```
or per-spectrum, e.g.
```
```
If the polarity is p…
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Realized today that *m/z* group construction could be done with a 1D density-based clustering algorithm like DBSCAN or OPTICS. Perks of this would be that the "hard" *m/z* window currently used by `mz…
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Hi yufree,
I am still trying to repeat your PMDDA workflow. And I have some question about the data used in this analysis.
For the raw data of samples, nist1950, you have five mzML files (for descri…
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Hi,
is there a node with which I could merge two mzML files? Both mzML files only contain MS1 spectra. I do not want to simply stack all spectra according to the retention time but I want to calculat…
LA307 updated
3 years ago