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Full disclosure: We have an instrument that may be having some issues.
That said, I have looked at this data, and I have not found zero-variance rows or columns in the dataMatrix (when substituting…
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![pfind](https://user-images.githubusercontent.com/44057490/46800183-7a3f9100-cd89-11e8-8bde-a2d3b284612c.PNG)
![pbuild error](https://user-images.githubusercontent.com/44057490/46800194-83c8f900-cd8…
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Laurent, do you know what governs the choice of number for the acquisitionNum in the mzR header()?
As some of the native ID formats contains multiple integer values this is important to ensure correc…
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This issue is a follow-up to https://github.com/lgatto/MSnbase/issues/167.
@adder asked for user-defined locations of the Modification:
> You also have to be able to specify where the variable m…
sgibb updated
6 years ago
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Hi,
I have a large .mzML file (~ 6 GB). When I use `chromatograms()` function, it extracts all chromatograms and loads them into memory. This operation is very expensive for both memory and opera…
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I am learning about hp-lc data using xcms and obtained an error message when I was trying to import a .cdf file using xcmsRaw. The file was generated in a Waters HP-LC. I am wondering whether I am e…
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I wondered if you guys would be interested in wrapping the pwiz functionality into a Python wrapper. Another chem lib [OpenMS](https://www.openms.de/) uses an utility lib [`autowrap` to make this proc…
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https://bioconductor.org/packages/release/bioc/html/rhdf5client.html
sgibb updated
3 years ago
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Does anyone have experience with [Skyline](https://skyline.ms/project/home/software/Skyline/begin.view)?
It seems to be the standard for MRM (targeted proteomics), source code is available and it …
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The current design of MSExperiment allows to filter e.g., all MS1 level. getMSLevel would still return MS1 as one of the contained level because it uses an internal member variable.
This leads to har…