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To write this up we need to record runtimes for how long it takes (wall and processing time) to process a minion dataset, both for marginAlign and marginCaller.
I think it would be good to do this o…
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Hi
im trying to make hybrid assembly for Ecoli using MiSeq and Nanopore data in Masurca. currently i m getting two errors marked in Bold bellow. my MinION fastq files should be OK, no idea why im …
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Hi all,
We are sequencing minION flowcells using the ARTIC amplicons and beginning to test out the ARTIC workflow as described on this page:
[ARTIC SOP 2019](https://artic.network/ncov-2019/ncov…
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So after successfully compiling TideHunter and AbPoa I'm running into this error when attempting to generate a consensus sequence:
[abpoa_gen_cons] "Not enough sequences to perform msa"
However,…
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First weekly progress update of my project (description of my project plan)
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General description of the project:
- MinION sequencing
- maintenance host vs. incidental hosts
- comparative study
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Hi all,
I am using align_trim.py script to remove primers from the alignment. In me case, we have performed SARS2 amplification with v3 primer set, and then sequenced with illumina (Miseq).
I …
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Upfront, I know Bracken wasn't necessarily designed to run on nanopore data.
For the read length parameter how would you recommend setting this? Median read length, average, minimum (as in #30 ),…
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