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Hi,
I'm trying to build some cohort definitions from some JSON files and retrieve the data from a BigQuery dataset. However, I'm getting the following error when trying to create the cohort SQL wit…
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Good morning - I'm brand new to the whole OMOP CDM ETL thing. I stumbled across Usagi and I was excited to get some help mapping our source code to concepts in the CDM. I installed Usagi and jumped …
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list of rules is here https://github.com/ABMI/DQUEEN_OMOP_CDM_Version/blob/master/inst/csv/rules/DQA_check_of_dqueen.csv
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If the source CDM does not provide visit/encounter start date, should the mandatory OMOP field visit_start_date be set to a default value? If so, what value?
Or, should the visit/encounter record fro…
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Hi - We're setting up Achilles to run on top of our delta lake through Databricks. I was having issues running the analysis through R, so I generated the SQL scripts and copied them over to Databricks…
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CDM 6.x has introduced some key changes to the omop CDM, that will require updating the ETL logic. New changes includes changes to cost table, payer_plan_period, visit_detail, location, location_histo…
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Transferring from the CDM github
This is one example (of several) of an issue that needs to be raised with OMOP vocabulary team.
Industry standard code ‘GQ’
- Is a CPT and HCPCS modifier has th…
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Hello,
I am using SNOMED and SNOMED Veterinary codes to map veterinary source codes to a common vocabulary. I am currently mapping breeds and have noticed they are almost all deprecated ('Validity'…
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TYPE | NOTES
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ITEM | OBSERVATION When we have information for deciles or quintiles of income status, how should we store it in OMOP-CDM
FORUM POST | http://forums.ohdsi.org/t/trying-to-find…
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We do not currently have a clear roadmap or contribution guide for the project. We should aim to have one and make this known to the OHDSI community ahead of our next planned release.
Currently, t…