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I have executed the command ./install.sh, but I got the following error. Anyone knows how can I solve this problem?
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make[3]: …
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I know there are a lot of dependencies with funannotate (it isn't ideal). I spent quite some time getting funannotate working on `conda`. However, as most of you know that have worked with `conda`, …
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**Operating system**
Which operating system and version are you using?
> Ubuntu 20.04.6
**Package name**
Which package / tool is causing the problem? Which version are you using, use `tool --ver…
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3 tissues..
Pacific Cod
https://pacbio.gs.washington.edu/
sr320 updated
5 months ago
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Hello,
I have a question: according to Oxford nanopore their last cells produce very accurate reads. Does "map-ont" still work as the best setting to map those reads? I am asking because the manual…
ghost updated
1 month ago
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Hello,
I cannot run demo because of the following error
```
Downloading MCF-7 pacbio RNA-seq reads...
--2024-05-12 13:24:56-- http://datasets.pacb.com.s3.amazonaws.com/2013/IsoSeqHumanMCF7Tran…
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Hi,
I am running the isoseq pipeline documented here:
https://isoseq.how/umi/cli-workflow.html
Using the single-cell iso-seq workflow.
I start my pipeline with hifi reads generated from 10x …
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Hey all,
I have noticed a few issues related to installing sqanti via conda, and I decided to build a docker image for the latest version. Please feel free to use it or distribute it as you see fit…
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I'm working with Brian Haas to use Isoquant to reconstruct genes in an amoeba species. This species has genes tightly packed together with almost no intergenic space, and genes typically have many in…
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Hello,
I am using FMLRC2 using de bruin graph from RNA-seq to correct PacBio Iso-Seq data to see their impact.
I found small fraction of PacBio Iso-seq reads are shortened >500bp.
Could I turn of…