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I ran Omics Integrator with a Beta parameter set to 1000 values between 1 and 2. All other parameters were fixed. This caused snakemake to error out and fail to produce a cytoscape file. I tried this …
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## Broken link found
Broken Link Checker found a broken link on https://github.com/openshift-kni/baremetal-deploy
Target: https://resources.github.com/learn/pathways
> HTTP_308
[View Actions …
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## Broken link found
Broken Link Checker found a broken link on https://github.com/rh-ecosystem-edge/ztp-pipeline-relocatable
Target: https://resources.github.com/learn/pathways
> HTTP_308
[V…
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Hello,
I am running fgsea on my custom_pathways. I have 445 pathways with rather large gene-sets (see the histogram plot).
![custom_pathways_distribution](https://github.com/ctlab/fgsea/assets/67…
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As reported [here](https://www.wikipathways.org/index.php/Pathway_Talk:WP3620#lqt_thread_659) and with a test:
```
curl -X GET --header "Accept: application/json" "https://webservice.wikipathways.…
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- [x] Improve description of functions in ?
- [x] Add heat map visualisation
- [x] Add web page for visualisations
- [x] Add function to deal with SingleCellExperiment objects
- [x] Optimize memo…
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Read the source NetCDF with osgeo.gdal, and (in a very basic vsimem tempfile way) transfer to xarray via rioxarray.
(code assumes GDAL_HTTP_HEADERS is set to your earthdata "Authorization: Header …
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Hi,
First of all thanks for developing and maintaining Gapseq!
From what I've understood the *-Pathways.tbl file summarise the completeness of the MetaCYC pathways found in the genome analyzed. Afte…
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Hi,
After merging 3 cellchat objects, I am trying to create a bubble plot:
netVisual_bubble(cellchat, sources.use = c("cell1", "cell2"), targets.use = "cell3", comparison = c(1,2,3), angle.x = 45, …
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**Submitting author:** @romainsacchi (Romain Sacchi)
**Repository:** https://github.com/polca/pathways
**Branch with paper.md** (empty if default branch):
**Version:** 0.0.1
**Editor:** @fraukewiese
…