-
Hi everyone,
I'm very new to the BEAST community and tumbled across an issue.
Using IQtree's ModelFinder, I identified the best protein substitution models for a set of proteins I included in a phyl…
-
```
REST API
http://pfam.sanger.ac.uk/help#tabview=tab10
Better as a separate repo, possibly on GitHub (where BioPerl is)
```
Original issue reported on code.google.com by `chad.a.davis@gmail.com`…
-
Example: a [possible mRNA](http://rnacentral.org/rna/URS00002CC6BB/90371) (resolvase) matches Pfam PF00589.20.
-
I'm trying to run eggnog-mapper in a computing cluster that I've never used before have eggnog-mapper v2.1.10 stuck forever in the pfam annotation step. I've used v2.1.9 in another cluster with the sa…
-
> Here is the enquiry email sending from a current user which might help those who have similar concerns.
I'm trying to run the HSD finder but ending up with an error, suggestions please.
Are ther…
-
I installed through git clone https://github.com/eead-csic-compbio/metagenome_Pfam_score
I installed HMMER v3.1b2 and all the dependencies through conda
numpy
matplotlib
pandas
seaborn
Im …
-
As Pfam has been moved to InterPro, I think it's causing errors trying to install and run Rhapsody now. Is there any kind of temporary patch or more permanent solution you could do to either update th…
-
Dear Brian,
Is there a way to check the version of the UniProt and Pfam databases that I downloaded?
The script `Build_Trinotate_Boilerplate_SQLite_db.pl` from Trinotate **version 3.0.1** was us…
-
Currently have the % of shared residues and % of shared proteins between CATH superfamilies and Pfam Clans, and CATH superfamilies and Pfam families.
One example of these results is for `http://daw…
-
``README.md`` does not say which versions of the PFAM database, HMMER tool, nor ``pfam_scan.pl `` script are used.
In particular, since they are not compatible, do you use HMMER 2 or 3? This in tur…