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Dear StellarPGx,
I'm applying your pipeline for using in pharmcat and I got this error message. im running it through our cluster. Please advise how I can fix this problem.
this is the command
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We want to create a UI for the Pharmacogenomics widget where we can integrate PharmGKB data into the Platform.
This ticket is for the development of the UI which will be done by the FE team
## Dep…
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As the data team, we want to process the Pharmacogenomics data provided by EVA because it is in an iterative state.
## Background
EVA has been working and processing pharmacogenomics data from P…
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* **What is the current behavior?**
I've got that issue at some positions:
_Discarded genotype at this position because REF in VCF (A) does not match expected reference (AT)_
My input vcf file …
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From the 23.12 release, a new dataset is being sourced by EVA: pharmacogenomics extracted from PharmGKB.
**The actions:**
- [x] Based on the [EVA provided documentation](https://github.com/apri…
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Hi,
This is what i got when i run the command gatk --help
(base) ameni@ameni-Aspire-A315-55G:~/Documents/pharmacogenomics$ gatk --help
Usage template for all tools (uses --spark-runner LOCAL w…
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I installed the package and pushed my api key, and tried to run a few commands with no success due to an SSL certificate problem:
> api_setup(api_url = "https://api.openai.com", api_key = Sys.g…
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- [x] Release schema repository if updates were implemented.
- [x] Release curation repository if updates were implemented.
- [x] Update the evidence parser repository: EFO, schema, curation version…
tskir updated
10 months ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CBIIT-CGBB/DeepTarget
Confirm the following by ed…
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We need to prepare some questions and identify the main KPIs used in the Human Genome area to answer them using the dashboard.