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Hi JuliaComputing,
My name's Ben and I work on BioJulia, right now my efforts are focused on getting Evolutionary Genetics and Phylogenetics modules for Bio.jl. The phylogenetic module is getting wri…
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https://en.wikipedia.org/wiki/Basal_(phylogenetics) presents basal as if some contemporary tips are closer to the root than others. Revise to indicate that basal means closer to the base of the tree (…
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# The problem
I am developing a model in which I observe data x under the model M(θ) with parameter θ, and know that the data x satisfy condition C.
I wish to perform inference under the conditi…
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It looks like this package is now archived on CRAN due to [failing various checks](https://cran-archive.r-project.org/web/checks/2022/2022-06-14_check_results_Rphylip.html). Are there any plans to fix…
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There is no wikipedia entry for the SOWH Test
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Hello,
I have a set of 100 UniRef proteins. I want to find orthologs of this set of proteins against a set of 44 transcriptomes. Would OrthoFinder help me in this ? I know OrthoFinder can find orthol…
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Hi all! For years I've been fetching these URLs every day:
https://cog-uk.s3.climb.ac.uk/phylogenetics/latest/cog_all.fasta.gz
https://cog-uk.s3.climb.ac.uk/phylogenetics/latest/cog_metadata.csv.…
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I am trying to install Mo-phylogenetics. But due to some error is shown in the screenshot, I am not able to install it.
![mo_phylo](https://user-images.githubusercontent.com/10563596/35548705-87bec59…
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Nexus files are used often in phylogenetics. Instead of having to support our own parsers, we should adopt mature parsers if they exist. The parser below handles Nexus and Newick files into R with mo…
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**Describe the problem**:
This issue was originally reported on the GBIF Feedback system: https://github.com/gbif/backbone-feedback/issues/256
> genus Lonchaea should be in Lonchaeidae family not Ta…