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Raising this issue to discuss implementing a function to convert a [genotype call array](https://discourse.smadstatgen.org/t/n-d-array-conventions-for-variation-data/16/4?u=alimanfoo) to a dosage arra…
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I believe you already have the functionality to do this? Would require a function like this:
```R
read_vcf
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My 2d-SFS all have a blip at p=0.5 (see attached), which I assume is caused by lumped paralogs problem (i.e., SNPs that always appear as heterozygotes). Use HWE filter, you say - but I cannot filter t…
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xml file:
![image](https://cloud.githubusercontent.com/assets/22200814/25462652/501f1ef0-2aa5-11e7-9604-04950b2fe846.png)
in the Text Capture:(show information of based)
Problem: the content betw…
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Hi,
All parameters name with a underline (_) to connect spaces except \[polyploidy classification\], why?
\[polyploidy classification\]
blockinfo = block information (*.csv)
ancestor_left = an…
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check?
is endoreduplication normal process for mouse?
Zpr1 | ZPR1 zinc finger | | DNA endoreduplication | | UniProt | Mus musculus | IMP | | zinc finger protein zpr1 pthr10876 | protein
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I had the following problem running fDOG
(hamstr) sxq020@masterv2:~/fDOG/output39_1$ fdog.run --seqFile /media/ym/desk16/sxq020/fDOG/output39_1/431143.fa --jobName A_test --refspec ORYSA@4530@230330 …
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Hi, I have been using paleomix for a long time (thanks for this program!) and am now trying to use it on some data I downloaded from SRA. Every time I run the pipeline I get an error that there are du…
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Hello,
I am about to start an assembly of a large genome and I have my input data (fasta/fastq straight off of the instrument) in 13 files of 30-50 GB each (fastq).
I wonder if it is possible to spe…
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I have a individual data (this species 2n=30 genome size nearly 3G followed the published paper report), the genome_length was 6257984238 when the coverage was 6.03 of my input data, but 3744743210 wh…