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SunPengChuan
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wgdi
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
https://wgdi.readthedocs.io/en/latest/
BSD 2-Clause "Simplified" License
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Retain (-r) - TypeError: 'Axes' object is not subscriptable
#51
erika-r-moore
opened
2 months ago
1
关于将现存物种映射到祖先物种并作ks图的问题
#50
Sa-ku-mo
closed
3 months ago
2
The number of gene pairs in the KS result file is not equal to the number of gene pairs in collinearity file
#49
cfz1998
closed
3 months ago
2
Problem of ancestral_karyotype_repertoire
#48
SUPERI-SAI
closed
6 months ago
2
Problem of preparing the data
#47
hyyuu
closed
6 months ago
7
error with -kf function in wgdi used to make ks figure
#46
RezwanCAAS
closed
7 months ago
6
Karyotype Evolution
#45
amvarani
closed
7 months ago
1
PeaksFit do not show two peaks
#44
amvarani
closed
6 months ago
5
KeyError: "None of [Int64Index ... in wgdi -c
#43
amvarani
opened
8 months ago
7
Why polyploidy classification without a underline (_)
#42
xiekunwhy
closed
8 months ago
1
Error in creating dotplot, ValueError: cannot reindex on an axis with duplicate labels
#41
salmanento
closed
6 months ago
6
关于祖先核型构建的几个疑问
#40
kuangzhuoran
opened
9 months ago
2
Legend error for "-kf" results
#39
Wenwen012345
closed
1 year ago
2
No "-bi" result file generation
#38
Wenwen012345
closed
1 year ago
4
Strange collinearity results compared to MCscanX.
#37
Wenwen012345
closed
1 year ago
2
Strange Ks distribution analysis results
#36
Wenwen012345
closed
1 year ago
10
issue with deal_gff.py
#35
B10inform
closed
6 months ago
2
Getting problem at karyotype mapping step
#34
mamtamasand
closed
1 year ago
10
helllo friend ,now the wgdi had eroror, it shows ValueError: cannot reindex on an axis with duplicate labels
#33
Jiangjiangzhang6
closed
1 year ago
6
_tkinter.TclError: unknown color name "white" I don't know how to solve this error
#32
Jiangjiangzhang6
closed
1 year ago
3
We prepared three input files according to the example, but an error occurred after the last step "wgdi -d total.cof" was entered
#31
Alalakikun
closed
1 year ago
10
_tkinter.TclError: couldn't connect to display "localhost:21.0"
#30
tinyfallen
closed
1 year ago
2
wgdi -icl error
#29
cfz1998
closed
1 year ago
6
deal_gff.py improvement
#28
ardy20
opened
1 year ago
1
ks result is empty
#27
ardy20
closed
1 year ago
5
Ancestor is unknown
#26
ardy20
opened
1 year ago
11
Error in Dotplot stage
#25
ardy20
closed
1 year ago
14
Preparation of input file
#24
ardy20
closed
1 year ago
2
Wgd events of multi-genomes
#23
ardy20
closed
1 year ago
17
example data
#22
sjfleck
closed
1 year ago
4
wgdi can not recognize the PATH of mafft
#21
tinyfallen
closed
2 years ago
1
wgdi -icl error
#20
123123456abc
closed
2 years ago
1
Is there an example to explain how to use wgdi to get cross-species Ks plot?
#19
xiekunwhy
closed
2 years ago
1
wgdi -kf legend
#18
pxxiao-hz
closed
2 years ago
3
Error in calculate Ks
#17
CGsTree
closed
2 years ago
9
sep="\n" cause ValueError?
#16
JiyangChang
closed
2 years ago
5
Error when run wgdi alignment
#15
Axolotl233
closed
2 years ago
2
separate Gaussian Fitting for two or more peaks
#14
tinyfallen
closed
2 years ago
5
ksfigure becomes color-filled blocks instead of lines
#13
tinyfallen
closed
2 years ago
2
ERROR: inconsistency between the following pep and nuc seqs
#12
xuzhougeng
closed
2 years ago
5
wgdi -conf ./conf.ini error
#11
Hua-CM
closed
2 years ago
2
wgdi -d get Segmentation fault (core dumped)
#10
dailing57
closed
3 years ago
2
KeyError: 'evm.model.Chr11.615.evm.model.Chr11.616'
#9
lipeng-j
closed
3 years ago
1
how much time ’wgdi -icl total.conf‘ need for vvi161s？
#8
leocha0
closed
3 years ago
4
UnboundLocalError: local variable 'group' referenced before assignment
#7
tiramisutes
closed
3 years ago
3
fix weird X11 error
#6
starskyzheng
closed
3 years ago
1
output plot sorted by contig length
#5
starskyzheng
closed
3 years ago
0
ZeroDivisionError: division by zero and ancestor_location
#4
sajjadasaf
closed
3 years ago
1
IndexError: index 2 is out of bounds for axis 0 with size 0 (ksfigure.conf)
#3
sajjadasaf
closed
3 years ago
6
师哥
#2
zhangzk-jiangsu-nanjing
closed
4 years ago
0
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