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@RexYing Hi, I am wondering if the stats provided in the paper under proteins column is for Proteins, proteins_full, concatenation, node-label features, etc.?
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### Chemical Testing of Proteins
Objective is to develop a chemical test that can test a sample to determine if the sample contains proteins
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## Expected Behavior
Searching proteins against a database with similar and exact proteins (from bacterial refseq proteome) should return hits with similar and exact matches.
## Current Behavior
Ru…
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Hi,thanks for your good jobs. I want to identify the iron-sulfur proteins of MAGs. I see that you will update this function in the near future. When will it be updated? is there a tool for this? thank…
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Hello !
I am using Metaeuk through BUSCO on my genome in order to do some gene prediction.
I expect that the single-copy, full-length detected proteins should have in their vast majority a methy…
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As mentioned in #95 we should only focus on datasets that already have a GVPL dataset created
- Once the dataset is created DO NOT retrain on a new dataset, otherwise this will mess up which proteins…
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To do when reviewing proteomics collections. Currently there is not an enforced pattern for [best_protein](https://microbiomedata.github.io/berkeley-schema-fy24/best_protein/) or [all_proteins](https:…
aclum updated
2 weeks ago
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Hey ! Thank for your tool :)
I am looking for gene involved in iron oxydation in genomes and MAGs. When Cyc2 is found there are not proteins sequences associated. It is the only gene for which it …
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- How many new sites/proteins were discovered (overlap between new and existing)? ( The 30K PMIDs have existing proteoform papers as well)
- If new site sites/proteins were discovered from the existi…
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We have updated in PD v2.5.0.400 the MSFragger node to the latest version and the search with this search engine works perfectly but the column with the MSFragger Score for each protein does not appea…