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## Infos on the context
- **Add-on edition:** StoryLiner Studio
- **Add-on version:** V 1.0.52
- Blender version, from installer or from zip: 4.1
- Blender was launched in Admin mode? Y
- **OS:*…
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Hi developers,
I have nanopore direct RNA, cDNA of RNA, and PacBio ISOSEQ and MAS-seq data from one sample, but from three different cell lines. Could you advise me on the best approach to analyze …
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I have 3 replicates of spatial RNA+ATAC multiomics data, can SpatialGlue integrate them together? Or I must cluster each slice individually?
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Hello,
I have a question of how to do both data integration and batch effect removal. I have previously posted [this issue](https://github.com/satijalab/seurat/issues/8797) where they introduced m…
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Hello,
I'm getting an error when trying to run croo after a successful run of the encode rna-seq-pipeline. My version of croo is 0.6.0
The command I ran is
`croo /storage/aadams/scripts/encode…
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Hello, I have the error when running guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac) when using my dataset.
![image](https://github.com/gao-lab/GLUE/assets/72248550/d5b383e5-5efe-…
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Hello, thank you for all your work in providing these great analysis tools.
I am trying to run dreamlet on a merged seurat object which has undergone cca integration. I have aggregated to pseudobu…
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https://github.com/Viktoria27010/Exam/blob/136241b2a60100c396b42a9109527e033aa26694/dz4/task1#L2-L16
1/1
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Hello!
When I use scTE, I have some questions about the number of cells of the results.
I ran cellranger as the code below:
`cellranger count --id ${sample} --sample ${sample} --transcriptome ~…
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Thank you for the helpful package. I'm curious about the feasibility of integrating multiple ambient RNA analysis methods simultaneously. Specifically, I have observed improved results when using Soup…