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**Is your feature request related to a problem? Please describe.**
We need to run SARS-CoV-2 through SneakerNet
**Describe the solution you'd like**
A new workflow with new plugins
* Amplicon-…
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There is a growing need for people to assign their sequences to clades and do some simple QC. In the longer term, we also want to support running augur on SARS-CoV-2 data in the cloud. I imagine a col…
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### Feature Request
We are reaching our CPU limit for our production Terra workspace. This is negatively impacting our pipeline and preventing us from reliably meeting dashboard updates.
This is…
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Dear author,
Thanks for sharing your wonderful code! Recently when I try to reproduce the ligand generation mentioned in paper for SARS-CoV-2 main protease, I encountered error `OverflowError: can'…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1946
MC.10+G22865T,G28423A(Orf9b:R47H,S:A435S)
GISAID query: G22865T, G28423A, C16332T
No. of seqs: 37(USA 14(AZ,CA,IA,MN,NJ…
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Is the training source code available? We want to refer to your [article](https://doi.org/10.3390/ijms232314683) in our paper as a baseline for SARS-CoV-2, comparing our results (not out yet) with you…
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S:T572I is the top mutation predicted by the mutation GPT on XEC backbone, and there are really multiple S:T572I lineages emerging.
From https://github.com/sars-cov-2-variants/lineage-proposals/iss…
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From branch 18 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
sub branch of #2668
KP.2.3+del21653_21655(S:S31-)+C28714T+A6184C(Orf1a:R1973S)+A29647G+C21691T,G22132T,A22995…
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There is a new branch of KP.3.3.3 with 31del tracked first in the comments of #1700:
Kp.3.3.3 > Orf1a:T654I ( C2226T) , T20784C, S:S31del (del21653-55)
Query C2226T, T20748C
Samples : 12
Places: 3…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1888
KP.3.3.1+G15543T+C21998A(S:H146N)
GISAID query: C21998A, G15543T,C23202A
No. of seqs: 33(USA 2(1 from Turkey) Japan 3(1…