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From branch 62 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+G17562T+S:F456L
Query: G17562T,T3565C, T22928C,-8716
No. of seqs: 62 (Australia 1 Canada 13 China 1 Denm…
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From branch 51 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C26873T+S:F456L,
Query: T22928C, C26873T, C18894T
No. of seqs: 59 (Australia 2 Canada 28 China 5 Germany…
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Hello! I've been using VirStrain to investigate SARS-CoV-2 . May I kindly ask what you mean about "10 mutation number can be a strong evidence for other possible strains". Where can I see the mutation…
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From branch 86 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C17119T+A2251G+S:F456L(T22930A)
Query: T22930A, C17119T, A2251G
No. of seqs: 21 (South Korea 20 USA 1)
…
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From branch 57 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C28603T+S:F456L
Query: T22928C, C28603T, T3565C,-17334,-T565A
No. of seqs: 58 (Australia 4 Canada 4 Chile…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1397
XDD.1--JN.1.22--XDD.1
Breakpoint 1 between 3566 and 5719
Breakpoint 2 between 13020 and 23972
Private mutations:G121…
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After finishing the SARS-CoV-2 support in #549, do more extensive testing with published sample data. List of samples to [download] and the [toolkit] to download with.
Find more samples from [SRA] …
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**Describe the bug**
The Public Health Alliance for Genomic Epidemiology team is trying out LinkML for describing amplicon scheme specifications. One bug is coming up for them, the serialization of …
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From Branch 147 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
Defining mutations: JN.1.18.2 ( S:R346T+S:F59S) > Orf1a:K1226E (A3941G) > S:F456L (T22928C) > Orf10:Q29* (C29…
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Please refer to issue #25 for previous discussions using surface-plasmon resonance. This issue describes updated efforts at establishing a robust biophysical screen to confirm binders to the SARS-CoV-…