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SBML model file -> BioRECIPE
I attached the sbml file (named map_mapk_2_4.sbml) I downloaded from Cell Collective and I used CellDesigner 4.4.2 to load and export the sbml file (using level 2 version…
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With SBML removed (#3) we need a simple scheme to read/write models
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```
model foo()
a=3
end
model bar()
b=10
end
A: foo()
B: bar()
```
should output 3 tabs: the main tab, a foo() tab, and a bar() tab in the preview window.
For foo:
```
…
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**Which problem would you like to address? Please describe.**
The CellML team is about to implement support for parameter estimation in OpenCor, and originally investigated PETab as the format to use…
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#### Problem description
I'm trying to use the function `cobra.io.sbml.read_sbml_model` to load a sbml model that I generated using function `cobra.io.write_sbml_model`. The model passed the online…
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Hi, just found your library! Very exciting.
Were you planning to add support for ODE simulation with diffrax?
I use diffrax to simulate my models and optimistix to fit them, and more generally wo…
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Supporting composite models with grouped nodes.
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Currently there seems to be no elegant way of using output parameters (e.g. scaling parameters) that have not been defined in the SBML model.
Would be great if they would be automatically recognize…
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Would be great if PEtab would be usable with non-SBML models. Formats to consider would include e.g. cellML, bngl, pysb, .... Personally interested in pysb support.
Will be a significant implemen…
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**Describe the bug**
I tried to load the [model](https://share.getcloudapp.com/nOu5gQBQ) into the latest version that i downloaded from the website and the application died.
**To Reproduce**
do…