-
Hi, I have many germ cell scRNA datasets, and all of them have a very low `unspliced` proportion ( about 5% to 10% ).
The `velocyto` pipeline gave me a wierd pseudotime trajectory that is contra…
-
**User story**
As a user of the scRNA Core Cell Extraction pipeline, I would like the bed verification for the LRC PBMC Bank plate to the LRC Bank Seq and LRC Bank Spare tubes to support the scenario…
-
**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
-
你好,我想分析CRR532990(https://ngdc.cncb.ac.cn/gsa/search?searchTerm=CRR532990),作者上传的是bam文件,我想知道怎么进行上游分析,我在dnbc4tools没有找到对应的处理方法,谢谢解答!
-
**User story**
As a user of the scRNA Core Cell Extraction pipeline, if I have made multiple sets of child tubes from the LRC PBMC Bank plate, I would like to be able to download the driver file for …
-
I see that the dropEst program reports a matrix of counts for genes in the input GTF. Would it be feasible to support output of a deduplicated BAM as well? I am not interested in scRNA-seq counts but …
-
Hallo, I wanna ask if its possible for you to upload the code used for data-integration of ATAC-sequencing data with LIGER :)
-
Hello, thank you for this tool! It would be very useful for me as I have scRNA-seq, scATAC-seq and proteomic data.
I would like to incorporate the PPI data into the GRN.
I saw this information in…
-
Hi,
I am very interested in using Dendro for my scRNA-seq dataset which was generated using plate-based Celseq2 method.
I have 4 different conditions, each 3 plates of 384 cells. How does the cell i…
-
Hi, I'm trying to run this pipeline on the cluster after changing the input as suggested in the readme page but run into error as following:
Process `get_datasets (scrna)` terminated with an error ex…