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Dear all,
I would like to get confidence intervals for random effects fitted by lme4qtl using profiling, but get many errors of the sort of "sqrt(m) : NaNs produced" for most, but not all, models/d…
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Dear Zhanxw,
I tried a SKAT analysis using rvtests for a VCF file containing multiallelic variants. It seems like it almost works but fails just at the end in one of its final steps. I have provide…
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I'm running kmergwas through kmergwasflow, although this seems like an issue with kmergwas so I'm asking here.
During the "associate_kmers" step it is creating all the permutations, but is not cre…
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Hello,
I am getting an error when trying to run the software. Here is my code:
```
seGMM --vcf my.vcf \
--input bam.file --alignment_format BAM \
--reference_additio…
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This issue is for broadly tracking the full process for onboarding collaborators (an EPIC in jira speak). At the moment we're focusing on WGS, but as we will be processing exomes, we should make sure …
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Hello everyone,
I have been trying to run a group-wise burden test, but I'm getting the same error over and over again:
`epacts group --vcf PPP_new_bial.vcf.gz --ped PPP.ped --max-maf 0.001 --gr…
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Is is possible run cis mapping with categorical interaction terms? I am trying to consider cell type in addition to genotype. My understanding of the GTEx paper is that the interaction term was conti…
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# Meeting with Stuart
He is suggesting a tradeoff between making volatiles and the leaf size, in the case of males. Repro unit and some clusters. Total amount of carbon produced by those clusters, …
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The process of getting data into the h5 format is the same as converting it into the format needed for the multi-site harmonization package. We should consider either writing a function that applies t…