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**Background**
Just an idea:
Currently SGE executor is being used for Nextflow pipelines. For this sake, an auto-scaling SGE cluster has to be deployed by cloud pipeline (over Kubernetes cluster). …
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Would you mind terribly if I re-organized the cluster job submission a bit and added Slurm support?
The basic interaction of the code would be mostly the same, with the addition of a "cluster_type" t…
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Researchers in my lab use conda to manage all bioinformatics software, including python and R packages. We have an available SGE cluster, and to submit jobs to the cluster that require a specific cond…
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From what I can gather, jip submits jobs to SGE by calling qsub with its arguments and then passing "exec jip exec --db " on stdin. This does not work, at least on the version of SGE installed on our…
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The cluster facility I have access to has Julia v0.5 at the moment.
Since I'd rather not have to worry with version compatibility is it possible to use this "cluster power" from another julia proc…
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Hi,
Other than SGE, is it possible to add to pyflow compatibility to clusters running other job schedulers such as PBS (TORQUE)? Thanks!
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Just like `parallel::makePSOCKCluster()` sets up a `SOCKcluster` object of `SOCKnode` workers, I think it would not be too complicated(*) to provide `CMQcluster` and `CMQnode` alternatives for cluster…
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Note, the add node also failed. Probably due to an issue with the new HVM AMI
> > > Launching node(s): node001
> > > Creating placement group @sc-wga_ssd...
> > > Reservation:r-7f932b04
> > > Waitin…
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Is there any way that I can configure starcluster to automatically add a custom PE to the SGE install when I start a cluster from an AMI? I would also need to add this PE as a reference to an SGE queu…
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As I'm not from a computer science background, I find there's a certain threshold in my understanding of server installation and software scheduling. I'd like to ask about the settings in ARC: how can…