-
I have assembled hap1 and hap2, and I want to use the VCF of hap1 relative to hap2 for splitting reads with Whatshap haplotag. When I simulate second-generation sequencing data using hap1 and hap2 sep…
-
Hi, thanks for your brilliant work and open-source code!
I tried your code to generate simulated scripted data and train ACT on the generated data. However, it turns out that the performance is low…
-
thank you for this interesting approach and for sharing the code.
I am really interested in using a similar approach to our dataset.
I have a couple of questions:
1. do you mind sharing the code to…
-
Hello,
I read in your paper that you simulated some Pore-C data and mentioned in the Supplementary notes that you did this by modifying DeepSimulator. However, the Supplementary notes only says tha…
-
Need to run the software on the simulated data (attached in a related) provided by Xiaoxiao and email the results to Xiaoxiao and myself. This dataset needs to be converted to CSV and included with th…
-
"""
The authors should design more simulated datasets to test the performance of these tools on detecting strain-level variants.
"""
-
-
- [x] Maybe chr19 or 1/10th of it? 100x coverage
- [ ] generate statistics for our pipleline
-
Currently, it is not possible to use the "GoodnessOfFit " and "LikelihoodRatioTest" classes of 3ML when fitting COSI spectra. This is because these two procedures internally handle the generation of s…
-
Really nice work. I see that you are not able to provide the flight data but could you provide a simulated sample to give us an idea of what the data looks like?