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Next steps:
- [ ] change hairpin process to run within singularity image (shub://MathijsSanders/SangerLCMFilteringSingularity)
- [ ] build singularity image for vcf_flag_modifier.py (python packages…
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I'm trying to make use of fuse-overlayfs inside a Singularity container (based on CentOS 7) by using its new `--fusemount `option. Ideally I want to use this to make a writable overlay on top of a rea…
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**Is your feature request related to a problem? Please describe.**
In an HPC environment, it's difficult to have containers that need to grow and/or gain permissions after they have been built.
R…
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Although no user has requested this, it would be interesting and useful to build containers for Docker and Singularity for svSolver executables. Singularity is supported on many HPC clusters including…
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hey label-schema team! I'm one of the developers for Singularity (http://singularity.lbl.gov) which is a container that is primarily for HPC and science (doesn't have security risks of Docker). I've s…
vsoch updated
6 years ago
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I know you have been working on packaging FLAG in one Singularity container. I have been trying to run it today on my institution's cluster and have been running into issues.
First, when I ran `bui…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux 9.4
### Workflow Version
2.2.3
### Workflow Execution
Command line (Local)
### Other workflow e…
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Should we also push our singularity containers to github?
https://github.com/singularityhub/github-ci
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Is a TES task currently allowed to use all system calls available? If the host kernel has seccomp and the task container is ran with Docker, [all these system calls](https://docs.docker.com/engine/sec…
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### Description of feature
Related to #2406
nf-core download could support a local repo, by performing all the functions after retrieving the repository itself i.e. zipping it up, downloading th…