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REANA allows to preview some files directly from the web UI.
In particular, reana-workflow-controller can set the following content types when returning the contents of a file:
https://github.com/…
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## Short description of the problem
Attempting to generate DAG diagrams with `anvi-run-workflow --save-workflow-graph` results in an error due to pulp v2.8.0 which installs with anvi'o v8.
## an…
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Currently my machine has conda with just the conda-forge channel, meaning the instructions in https://github.com/pyani-plus/pyani-plus/blob/main/CONTRIBUTING.md failed when trying to install snakemake…
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### Command description
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language.
##…
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After developing the initial workflow for the `dnadiff` method #12, we need to ensure that we can reproduce the `AlignedBases` value provided by `dnadiff`.
To achieve this, we should:
- Write a mo…
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### Context
Originally proposed in https://github.com/nextstrain/cli/issues/373#issuecomment-2174603786
It'd be helpful to have a summary of workflow stats in the form of a [Snakemake report](ht…
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In ["Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023, `10.1093/molbev/msad207`](h…
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**Software Versions**
Snakemake 8.16.0
snakemake-executor-plugin-slurm 0.9.0
slurm 23.11.7
**Describe the bug**
I have recently moved to Snakemake v8.16 and have been trying to execute…
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At the moment the workflow waits for each experiment to finish before submitting another. Would be nice to be able to submit one after another without waiting.
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**Snakemake version**
Current `main`, 5a4f72fe2bd79e33624328d2bcca50bb30da8e55.
**Describe the bug**
`ERROR collecting tests/test_script_py/scripts/test_explicit_import.py` in a virtu…