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Dear CarolineOhrman，
Using the CANSNPer software, I discovered SNP loci in the B.217 branch that can further distinguish CP012092 and CP007148. I would like to give them NEXT FREE SNP, B.316, …
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Hi,
I'm trying to used fine-mapped results of complex traits from SuSiE as the input of fastENLOC as you recommended. I notice the following code you provided in input.md to help contrust the input…
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I could follow the [Bare metal setup][1] without any issues on a newly installed Ubuntu 24.10 system (with Linux 6.11 containing the SNP Host patches) without issues:
AFAIK I enabled SNP correctly…
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Hey guys,
I am struggling to find some good illustrations to:
`short reads`
`long reads`
`CNV`
`STR`
`SV`
`SNPs`
`indels`
Thank you very much for your amazing work!!
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How to choose SNPs as the input for alleleCount? More specifically;
1. How many SNPs are sufficient throughout the genome?
2. How should the SNPs be distributed along the genome? i.e. in terms of …
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# Description of problem
Several build failures have occured when I tried the procedures in [Kata Containers with AMD SEV-SNP VMs](https://github.com/kata-containers/kata-containers/blob/main/docs/…
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**Describe the bug**
I have a cram file with amplicon sequencing reads, and a cram file with its corresponding "haplotypes". I work with a diploid, so that means I have at most two haplotypes p…
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Hello,
I wonder that how many SNPs can handle the NEWHYRIDS program? I installed it to the university server and it is running with ~180GB memory. Do you have any guess for optimal analysis? Thank yo…
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Hi there!
Thank you for the practical package. I have a question regarding the coloc.abf function when running it between my eQTL and GWAS data, both derived from the same samples. Here’s the code …
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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
Your script correctly implements the necessary `bedtools` commands for sorting, merging, and subtracting the various feature files. You used `be…