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### Description of the bug
I have a list of SRR IDs in a file and am trying to download them using the pipeline. However, I constantly get an error at the SRATOOLS_FASTERQDUMP step.
This is an exa…
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from: https://github.com/llvm/llvm-project/commit/8320b97ab9f25d726379832342f3d5d48962368d
to: https://github.com/llvm/llvm-project/commit/b5e47d2e409f2fb70c9397fccf4a74660c319bb0
commit: af7aab9c6040…
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Paper text:
> All raw sequencing data in FASTQ format are available in the NCBI Sequence Read Archive (SRA) BioProject database under accession number PRJNA956585 as BioSamples SAMN34224450–SAMN3422…
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Over the past 24 hours, I've tried using prefetch with multiple .krt files from multiple dbGaP projects, with no success. The input and output are always of the form:
`$ .../sratoolkit.3.1.1-centos…
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Hello Guys,
You're project seems super nice, especially the viz parts that retain lot of my attention, and you seems to do a very great job however i'm struggling to setup the project being on MacOS …
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using MitoZ in Docker, works well with my fastq.gz files but when I download from SRA, these reads fail. Looking at the output, the cleaned sequence file is empty. I assume there is some format issu…
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https://github.com/JuliaData/MemPool.jl/blob/8508088b32caff629ce6905cb263f78cdc068cd6/src/storage.jl#L963
The call to `reverse` above assumes `to_delete` is in ascending order, which isn't necessar…
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### Problem Description
@jmtsuji This code fails.
```markdown
# For the long read data, to get the quality scores (i.e., not SRA Lite format), you will need to use the SRA Toolkit
# availab…
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Hi again! Some of the .sra runs I'm working with seem to have been split into smaller .sra runs. From my understanding, that means I have to merge the .bam files after aligning each of these files. Wi…