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Hi,
Thanks for developing the software PhosPiR. I really would like to try it on our phosphoproteomic data. I don' have much experience in programming as well as R. I watched the two YouTube videos…
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File "/usr/local/lib/python3.9/site-packages/ebel/manager/orientdb/biodbs/stringdb.py", line 124, in insert_protein_data
df = pd.read_csv(
ValueError: Usecols do not match columns, columns…
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**Is your feature request related to a problem? What value do you see this adding? Please describe.**
For those organism having both ensembl and STRINGdb species, like Human and STRING.9606.Homo, som…
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urllib.error.HTTPError: HTTP Error 404: Not Found https://stringdb-static.org/download/protein.actions.v11.0/9606.protein.actions.v11.5.txt.gz could not be downloaded!
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Physical interactions appear to come from STRING, but STRING is an aggregator. Shouldn’t a primary curated data source like BioGRID or Intact be ingested? This would also allow the inclusion of primar…
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On the first page of iDEP, the dropdown list is incomplete. StringDB species are not included in the list.
The same issue with the STRING-db API modules
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support stringdb sdk
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+ go through the stringdb api document,
+ support querying network from stringdb with input of DEGs or subset of DEGs that are significantly enriched in a particular pathway.
+ visualize the networ…
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https://mp.weixin.qq.com/s/bGPP0Y8lI2qJ1KKvKD6e3Q
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/AnnekathrinSilvia/GeDi
Confirm the following by e…