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iDEP-SDSU
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idep
Integrated Differential Expression and Pathway analysis
http://ge-lab.org/idep
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idep.96-How are species lists implemented in the source code
#230
Rwtkc
opened
5 months ago
0
Hierarchical clustering in sample tree?
#229
marwa38
opened
9 months ago
0
size of gene names on heatmap idep 1.1?
#228
marwa38
opened
10 months ago
0
specific genes statistical analysis?
#227
marwa38
opened
10 months ago
0
scrol down is inctive?
#226
marwa38
opened
10 months ago
1
list of genes/pathways for the type of genes or shared genes in venn diagram?
#225
marwa38
opened
10 months ago
0
some suggestions
#224
marwa38
opened
10 months ago
0
How do you caculate the normalized value in processed data
#223
lizhebio
opened
10 months ago
0
Paper that utilised iDEP for RNAseq downstream analysis
#222
marwa38
closed
11 months ago
1
DEG in IDEP 0.96 and IDEP 1.0
#221
ysuzuki1978
opened
1 year ago
1
different annotation inputs?
#220
marwa38
opened
1 year ago
0
"Diff_Chr_Regions_.csv" and "Genes_in_Diff_Chr_Regions_.csv" are not consistent to genome plot
#219
EikoSAIJOU334
opened
1 year ago
0
Update data104 to data104b
#218
morgantaschuk
opened
1 year ago
0
Enhancement option: Ensembl genes ids into Human Gene Symbols?
#217
marwa38
opened
1 year ago
0
volcano plot?
#216
marwa38
opened
1 year ago
0
Using full EdgeR DEG analysis
#215
remybonnav
opened
1 year ago
0
iDep execution in command line
#214
Luiky1
opened
1 year ago
0
message
#213
gexijin
closed
1 year ago
0
Update restart.sh
#212
gexijin
closed
1 year ago
0
ShinyGO 0.76 archived. 0.76.1 now default from ShinyGO repository
#211
gexijin
closed
1 year ago
0
message
#210
gexijin
closed
1 year ago
0
update golem brance
#209
gexijin
closed
1 year ago
0
Database path can be set for iDEP 0.96 and ShinyGO 0.76 as environmen…
#208
gexijin
closed
1 year ago
0
revert environmental variables
#207
gexijin
closed
1 year ago
0
environmental variables for database
#206
gexijin
closed
1 year ago
0
Environmental variable for database
#205
gexijin
closed
1 year ago
0
Test analytics
#204
gexijin
closed
1 year ago
0
how can we have a color key scale in correlation matrix and K-means clustering?
#203
kamalmdmostafa
opened
1 year ago
3
update golem branch with newer changes in master
#202
gexijin
closed
1 year ago
0
File server
#201
gexijin
closed
1 year ago
0
Ngnix load balancer improvement
#200
gexijin
opened
2 years ago
0
Golem
#199
gexijin
closed
2 years ago
0
Export edge table from network tab
#198
palenic
opened
2 years ago
0
What is "c.out"?
#197
repbio
closed
1 year ago
1
Update iDEP landing page
#196
gexijin
closed
2 years ago
0
Message
#195
gexijin
closed
2 years ago
0
Minor changes to UI at KEGG tab
#194
gexijin
closed
2 years ago
0
iDEP 0.951 visualize expression on KEGG diagram
#193
gexijin
closed
2 years ago
0
New version of iDEP 0.95 slow on DEG2
#192
gexijin
closed
11 months ago
0
More cores
#191
gexijin
closed
2 years ago
0
Default settings for figure sizes download
#190
gexijin
closed
2 years ago
0
pathway names abbreviated.
#189
gexijin
closed
2 years ago
0
Long pathway names in ShinyGO barchart
#188
gexijin
closed
2 years ago
1
Mixed types of gene ids in ShinyGO
#187
gexijin
closed
1 year ago
0
Default genes in gene plot iDEP 95
#186
gexijin
closed
2 years ago
0
bug caused single gene plot not working in iDEP 95
#185
gexijin
closed
2 years ago
0
Fix matches species message; download all significant pathways
#184
gexijin
closed
2 years ago
0
minor message change
#183
gexijin
closed
2 years ago
0
ShinyGO UI improvements; notification for species matched
#182
gexijin
closed
2 years ago
0
Redundant pathways now require names matching 50%
#181
gexijin
closed
2 years ago
0
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