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Hi,
Are the .gtf and the prebuilt_indices are somehow related ?
I download both and I got different annotations:
https://labshare.cshl.edu/shares/mhammelllab/www-data/TEtranscripts/TE_GTF/T2T…
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I noticed that the T2T-CHM13 database does not list the genetic map for the T2T-CHM13 version. Is there any resource available to obtain the genetic map for the T2T-CHM13?
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Description:
I encountered an issue while running the script feedback_training_raft_t2t.py. The script fails with the following traceback:
Traceback (most recent call last):
File "/hdd/hars…
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Dear Jim,
Thank you for the amazing IGV notebook tool.
I recently wanted to visualize some alignments (in BAM format) using IGV notebook against the T2T genome from RefSeq (GCF_009914755.1). I …
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The Telomere-to-Telomere (T2T) consortium has released a full build of the human genome based on the CHM13hTERT cell line, described here: https://github.com/marbl/CHM13
The complete genome is avai…
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Thank you for the great effort in genomics! I was wondering if there is already a straight forward way to annotate CADD scores for T2T-CHM13 calls?
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Add a feature that allows specific delays.
Idea: Answer (Private, to not spam the instance with dev-nonsense) to your own Toot containing one of the following:
`t2t.delay 30m` -- delay 30 minute…
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**1. What were you trying to do?**
VG stats on 3 files after aligning them using vg giraffe and the T2T-CHM13 reference.
**2. What did you want to happen?**
vg giraffe to use paired-end mappi…
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```
What steps will reproduce the problem?
1.$ cp sample.t2t sample2.t2t
2.$ txt2tags --slides -t art sample.t2t
3.$ txt2tags --slides -t art sample2.t2t
4. sample.art and sample2.art are OK
5.$ txt2t…
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### Description
I got a unexpected error when I was using t2t-decoder! It worked well before I updated the tensor2tensor code.
### Environment information
### For bugs: reproduction and erro…