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Dear Everyone,
I installed krona trough conda and get krona version 2.7.1
When I run` updateTaxonomy.sh` with command `./updateTaxonomy.sh` I get error like this:
> Fetching taxdump.tar.gz (if …
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Using the latest version (on Ubuntu, installed from pip3) and I get an error:
```
jorvis@ref-db-build:/dbs$ taxadb download -o taxadb --type taxa
INFO:taxadb.download:Downloading taxdump.tar.gz
…
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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v1.1.2
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2ME Versi…
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### Description of the bug
Issue : Resolving ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)... failed: Name or service not known.
wget: unable to resolve host address ‘ftp.ncbi.nih.gov’
Plea…
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* NCBI taxdump format
* greengenes tsv format
ctb updated
11 months ago
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Hi @nick-youngblut,
when I try to build the gtdb database using r207, I get:
```
gtdb_to_diamond.py -o gtdb gtdb_proteins_aa_reps_r207.tar.gz taxdump/names.dmp taxdump/nodes.dmp
2023-08-23 13:53…
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Hi, I've been trying to set up the mar database for a metagenomics project, but I've been running into two odd issues:
1. Sometimes, when installing the database (I've found that this goes with all…
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Hi!
I've been having an issue running any configuration of filter beyond --help. The error seems similar to #161 despite the bug fix. Running on blobtoolkit version 4.3.5, python 3.9. I've attempte…
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Hi,
I was running the command line to add hits into my blobtoolkit file (command just below) but the run fail and end with an error.
Could you help me identify the problem?
I installed the blobto…
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Write documentation to create the various databases used by BlobToolKit pipelines – BUSCO, Diamond, Blast