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From the CL meeting on August 18th, 2021:
Shall we automatically close existing issues that have not been updated in the past 3 years, as we have recently done for Uberon?
If so:
- [ ] Shall an…
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We've gone through two iterations of ways to bulk-identify datasets for inclusion in Gemma.
It started with using Gemma tools in conjunction with some bash scripts to process and filter the results…
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Comparison of the time deltas on the recent SLURM logs show the step 5 clusterfunk annotation step takes two orders of magnitude longer than the comparable step 4 annotation. I am intrigued by this an…
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list generated back in 2013:
Study ERP002090 (CENP-A (Cnp1)) AE
Study SRP019199 (Schizosaccharomyces pombe fission yeast deletion library barcode sequencing)
Study SRP005690 (Schizosaccharomyces …
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I haven't looked into the functionality of `geoparse`, but I was able to get this working with `rentrez` last week:
```r
geo_template
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Hello,
I am running SqueezeMeta with 1 metagenomic sample and got this error message. I have tried to restart the process but it keeps failing. It was running fine until this step and it fails duri…
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```
Anvi'o version ...............................: esther (v6.2)
Profile DB version ...........................: 31
Contigs DB version ...........................: 14
Pan DB version .............…
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I am trying to set up a fresh installation of anvio-master in an old computer (macOS Mojave 10.14.6).
I followed the steps in http://merenlab.org/2016/06/26/installation-v2/#following-the-active-c…
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Hi,
I installed Anvi'o on my VM Ubuntu 18.04 OS following the guidelines for "painless installation with Conda" on the merenlab website, however when doing the self-test I keep getting the error mes…
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Hi there,
I installed anvio-5.5 on my computer with Ubuntu 19.04 using the following command:
```
conda create -n anvio5 -c bioconda -c conda-forge anvio=5.5.0
```
Then I tested the installatio…