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I keep seeing the presence of an unknown taxa with the name "V1" anytime I construct my taxa bar plots. However there is nothing in my taxanomy.tsv file that traces back to this "V1" taxa and it seems…
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According to recent emails with the MIDORI developers, it seems wise to update PEMA to where the midori db is now published. Hopefully this will solve a couple of issues that we have had (1) the gap…
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See this as a workflow:
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Building OTUs, would require that your reads align very nicely. That is pretty hard with Nanopore reads, and you end up with a lot of singletons. I have tried clusterin…
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Bactopia is continuously being updated and there are still many things on the roadmap. To be more transparent, I'll document what's planned and what needs to be done. Feel free to make suggestions, an…
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Hello,
I am trying to build standard kraken2 database. I have used the default command:
`kraken2-build --standard --threads 8 --db kraken_standard`
The database is created without any errors but …
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It would be nice to average the features from multiple frames. In the most basic case, this would entail:
1. Storing the outputs from the last N model queries into a matrix (each row is a frame, and…
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Hello,
Maybe I missed something while using Burrito. I discovered it today and it seems promising : I used piCRUST2 on my 16S data and tried to upload it on BURRITO.
I obtained EC numbers, have…
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Algunos abstracts parecen estar incompletos:
![image](https://github.com/colav/impactu/assets/60363752/91d55b8b-5998-400e-bf38-9b2b93f50620)
![image](https://github.com/colav/impactu/assets/60363752…
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**Species also appear in genus Piophila**
All the named, extant species in this taxon, Mycetaulus costalis, M. hispanicus, M. latipennis, M. nigritellus, and M. polypori, also currently appear under …
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Hi,
I'm quite new to R and Phyloseq and have a question, which is probably really easy, but I have no clue how to calculate a standard deviation of the taxa in a phyloseq object
And I couldn't fi…