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Hi, @oushujun
Thanks for developing EDTA.
I am studying fall armyworm which is a lepidopteran pest.
before using EDTA(1.9.8) to annotate assembly,i tried some methods to annotate this assembly.
1.…
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Spec:
1. Load all FlyBase features with the following types:
```SQL
SELECT f.uniquename AS fbid, typ.name as ftype; FROM feature f
JOIN cvterm c on f.type_id=c.cvterm_id
…
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Thank you for developing such an excellent tool. The paper “Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution” mentio…
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Hello，Dr. Yu,
I used IGV to check the breakpoints, and extracted the reads mapped within 150bp from TSD, assembled and aligned them.（samtools）
Is there a way to assemble a more complete ERV, via…
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hiii
I was trying to install transposon_annotation_tools. During installation I am getting an error : " Output in format: Requested package -> Available versions". kindly help me to resolve the issu…
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Dear @alexdobin
It's a great piece of software and we achieved our assumptions.
Now there is a problem that our manuscript was asked a question by the reviewers. Questions are as follows:
"L48…
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This looks like a great resource! I'm looking at prokaryotic transposons and I'm interested to know if MITE-Tracker has ever been tried on larger, autonomous, class II TEs? And specifically whether sp…
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Hi, I just wanted to let you know that MACS2 failed to finish when reference chromosome names contain symbols (e.g. `2L52.1a:gene=WBGene00007063`, `ZK856.2:type=Transposon-mRNA:gene=WBGene00023448`, e…
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Hi Kevin,
I encounter an error when I ran step4 (pipeline) on my genome annotations. Any idea why this occurred?
Thanks,
Chan
The code I used is:
reasonaTE -mode pipeline -projectFolder Pam…