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Hi Fengchao,
I'm trying to set up a DIA_SpecLib_Quant proteomic workflow using the latest versions of FragPipe and DIA-NN. The run finishes with DIA-NN output files however, I keep getting a skyline …
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Nor the documentation, nor the test cases provide such examples (same for XML and JSON results, by the way). But I question the usefulness of `rml:SPARQL_RESULT_TSV`. Taking the example of 0003, we wo…
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Hi
The annotation table gives a range of database comparison results for each gene, but only some of the results are retained in amg_summery.tsv, e.g. when hitting both kegg and pfam only the id …
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Hello,
UKB has removed the `Codings.tsv` and `Data_Dictionary_Showcase.tsv` files and [mention](https://biobank.ndph.ox.ac.uk/showcase/exinfo.cgi?src=AccessingData) they are available through the Sho…
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The DB file is not that easy to use. Maybe you can consider TSV?
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Hi!
we are trying to use this bridge. Pushing & cloning works fine, but I get a strange error I cannot pinpoint.
I already followed some debugging instructions and now instead of `datalad get`, I …
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### What happens?
Simply trying to read a TSV file from S3, following examples from the official docs.
Getting:
```
Traceback (most recent call last):
File "/workspaces/duckdb-sandbox/main.p…
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Hello @EricKutschera,
is there a way to do this `classify_isoform_differences.py` for all isoforms? not doing individually for each isoform so that I have at the end all isoform in a single tsv fi…
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## Overview
In `omim.sssom.tsv`, there is this weird extra line break before the closing single quotation mark, appearing as `# '`. IDK what's causing it.
`omim.sssom.tsv` subsection:
```tsv
…
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Hi! Appreciate I'm maybe running a bit full-steam ahead here and asking about software that's not published - I was looking at running vamb, and noticed there is an option to use taxonomy information …