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https://mp.weixin.qq.com/s/UehaaJZgARryH7P25v9wNQ
ixxmu updated
2 years ago
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Hello Markus!
Thanks for your work on PureCN!
**Describe the issue**
I'm trying to get copy numbers for a number of FFPE samples, both control samples and tumors are quite noisy.
Do you have a…
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Hi,
Try to run your demo1 data:
Rscript SV_performance.R manta.format true_SV_sets_somatic 0 0
Error in if (mode == "precision") { :
missing value where TRUE/FALSE needed
Execution halted
…
xc611 updated
2 years ago
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Hi guys,
I've been trying to run purecn through the bcbio workflow, there is very little documentation on how this works or whether I can provide mapping bias or panel of normal data. Some question…
waemm updated
3 years ago
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Hi, I tried PureCN for calling CNV and tumor purity estimation for WES of cfDNA. I have cfDNA from patients with buffycoat control but they use different capture kit version. So I selected ~20 cfDNA f…
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Hello again,
I was testing PureCN on TCGA samples and noticed some glaring difference in tumor purity that was previously reported in [this](https://doi.org/10.1038/ncomms9971) paper (figures 1, 2;…
djb17 updated
3 years ago
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https://zhuanlan.zhihu.com/p/136747705
ixxmu updated
3 years ago
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-Just trying to use the standard Fragpipe tutorial steps to generate a spectral library from DDA files. I get most of it done I believe but the log has an odd trace at the end I'd like to know if it's…
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I am trying to run open-workflow on a timsTOFpro data but it is failing with "could not find mzData" message? I have loaded the output folder at https://drive.google.com/drive/folders/1U_n-hxpWwUq7EDj…
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KS Solna, BioClinicum, J8:10, Tantal
**New features and bugfixes since last time**:
1. Display hgvs coordinates on pinned and causatives
1. Clear panel pending changes
1. Fixed ACMG classificat…