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Attempting to extract data from mzXML file containing ms1 and ms2 scan (two total).
Read file in using mzR:
ms_file
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**Decision that needs to be made at the bottom of this description**
Request quote from UW Metabolomics for metabolomic and lipidomic analysis of time series samples:
## Samples
Samples: …
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# From UW
For untargeted and lipid analysis, you would need to provide two separate sample specimens (if possible) since these two assays require totally different sample prep. Our prices per samp…
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I'm doing some test with the erah package, following the [tutorial](https://cran.r-project.org/web/packages/erah/vignettes/eRahManual.pdf), and when I get to the deconvolution step, there's an error t…
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Hey there,
Thx for this wonderful tool.
I read in the code that there is an option for direct .csv import for MS datasets: `def _loadCSVImport(self, path, noFeatureParams=1, variableType='Discrete…
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Create a backend using various test data sets.
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Before and after re-quantification the intensities often differ and after manual testing, FFM has a more reasonable result. I am working again with the benchmark data [MTBLS733](https://www.ebi.ac.uk/…
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Hello,
I developped a centroidization algorithm adapted to high resolution MS/MSn which takes as input and xcmRaw object and return a centroided xcmsRaw object. I feel like this could be a good ad…
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We've implemented some functionality that allows to group LC-MS *features* (i.e. defined by their m/z and retention time range) into *feature group* where ideally each feature group collects all featu…
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Hi!
I am using an untargeted metabolomics data and I have around 5000 features (variables), two time points and 44 subjects, and 4 Treatment groups.
I am getting following error:
mod
CM-07 updated
3 months ago