-
Hi!
I 've recently used SciClone for a sample pair of primary and relapse. In the output table, the are some NA values which, as far as I know, correspond to mutations that are not shared between s…
-
We can support requesting the built-in correlations from the cli, so that it is not just an interface for direct python users. I'll need to look into how this is done elsewhere in janus.
We could h…
-
Hello,
there are one behavior that "vaf" (select all the function) does not respect.
* it does not select the whole function if it's not declared on single line
For exemple :
```/**
…
-
I ran itdseek on an amplicon data set of 8,788 pair-end reads for a known ITD using the recommended "Your own data" pipeline given in the usage examples.
While the ITD was detected, the calculation o…
-
Hi,
First of all, thanks for distributing the software.
I generated the input for clonevol using pyclone-vi and ran the 'infer tree' process of the clonevol, but the following error message occu…
-
Hi, Dang, H. X.,
I'm trying to use Clonevol, but I cannot get consensus model when I tried to run "_infer.clonal.model_s".
In this example, I have 6 samples (3 primary, 3 metastasis), and I ran P…
-
Hi,
Congrats on your recent pre-prints on targeted Nanoseq. We saw it described an unbiased BAM VAF. Is this calculated by the Nanoseq pipeline?
If not, do you all calculate it specifically from t…
-
3.1.7版本
android.graphics.Canvas.throwIfCannotDraw (Canvas.java:1282)
android.view.GLES20Canvas.drawBitmap (GLES20Canvas.java:593)
com.tmall.wireless.vaf.virtualview.view.image.c.b (VirtualImage.j…
-
Hi，
I am using Pindel to call indels in our samples, Our samples are tumor-normal samples, and it's target sequencing data, the library was constructed by capturing.
I used BWA mem to map the tr…
-
Hi,
Thanks for developing such a wonderful tool for long-read analysis. Recently, I performed Severus to call somatic mutations between paired tumor-normal samples using the command
`--target-bam…