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Hello,
When parsing an input .vcf file with a QUAL value = 0.0, i.e.: `MN908947.3 12739 . T TA 0.0 PASS DP=3.0;DPS=3.0,0.0 GT:GQ 1:0`
the float QUAL value i…
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Filters other than reference/alternates/sample_name are ignored for the comparison VCF—it would be nice if we have the ability to filter JUST the variants in the selected run or just the variants in t…
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Figure 1: Training & Testing Data
A.
Pipeline Schematic for identifying truth variant set
B.
Comparison of CG with Illumina Phased Pedigree results for NA12877 vs GIAB NA12877
just …
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Support concordance visualization and querying (intersection, union, etc) between N VCFs on the /examine page.
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- The goal is to compare multiple strains of the same species and display differences between them in the browser
- The usual way is to align sequencing reads from one strain to the reference strain,…
mrshu updated
6 years ago
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beforehand: your addon seems awesome and thanks for releasing your work as FOSS! :+1:
since the default address book of Thunderbird is pretty outdated and more and more people are switching to [Ca…
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Package available to run with tensor flow.
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Hi,
Is it possible to use hap.py to make allele only comparisons? (i.e. Can the genotype check be disabled?). I know som.py does this, but I'd like to keep hap.py's haplotype resolution - only wit…
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Hello,
Thanks for this useful utility.
I have data in MAF format (NCBI build 37). I am trying to lift it over to hg38 using the following Crossmap (v0.6.6) command:
```
CrossMap maf b37ToHg38.…
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Hi! First of all, thanks very much for developing this tool.
I'm trying to run and I got the following error. Let me know please if you have some clues why and what to do. Thanks!
QC for Chromosom…