hammerlab cycledash issues

hammerlab / cycledash

Variant Caller Analysis Dashboard and Data Management System

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issues

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Don't look for BAMs on HDFS

#865 ihodes closed 8 years ago
3
Give a better error than 404 when submitting a run with a BAM that doesn't yet exist in Cycledash

#864 ihodes opened 8 years ago
0
Sticky header on /examine

#863 hammer opened 8 years ago
0
long -> int (to match database schema)

#862 ihodes closed 8 years ago
1
Tweaks from styleguide

#861 jaclynperrone closed 8 years ago
3
Check for file:// in VCF path

#860 danvk closed 8 years ago
1
Worker status is misleading

#859 armish opened 8 years ago
0
Update to React 0.14

#858 danvk closed 8 years ago
5
Handle Intragenic variants better

#857 armish closed 8 years ago
2
SSL Cert for Cycledash demo

#856 ihodes opened 8 years ago
0
Varcode annotator fails when there is an intragenic variant

#855 armish closed 8 years ago
0
Hitting Login with empty form returns Internal Server Error

#854 danvk opened 8 years ago
0
RNASeq expression worker

#853 ihodes opened 8 years ago
9
Make Cycledash useful for PGV

#852 hammer closed 8 years ago
8
Add starring

#851 ihodes closed 8 years ago
7
Adds a min-height to table container

#850 jaclynperrone closed 8 years ago
1
Bump pileup version to 0.4.0

#849 danvk closed 8 years ago
0
Closes 846

#848 jaclynperrone closed 8 years ago
1
Add selected state to runs/bams rows

#847 jaclynperrone closed 8 years ago
2
Comments trail off outside the borders

#846 tavinathanson closed 8 years ago
0
Update README screenshot

#845 jaclynperrone closed 8 years ago
1
Runs page empty states

#844 jaclynperrone closed 8 years ago
5
Sort by array fields

#843 danvk opened 8 years ago
0
Control+Enter should save comments

#842 danvk opened 8 years ago
0
Make genotype_extractor work even if varcode fails

#841 armish closed 8 years ago
1
Unable to submit VCF with Structural Variants

#840 danvk closed 8 years ago
1
Encode all examine page state in the URL

#839 danvk opened 8 years ago
0
Resurface worker status

#838 jaclynperrone closed 8 years ago
2
Disable screenshot-based pdiff tests on Travis

#837 armish closed 8 years ago
2
Bump pysam requirement

#836 danvk closed 8 years ago
1
Remove empty comment bubble

#835 jaclynperrone closed 8 years ago
1
Fix project notes

#834 jaclynperrone closed 8 years ago
4
Embed the GA4GH API in Cycledash

#833 danvk closed 8 years ago
5
Add missing spaces

#832 tavinathanson closed 8 years ago
1
Associate comments with users and use username for author name

#831 armish closed 8 years ago
5
Add Python tests that hit each page served by Flask

#830 ihodes opened 8 years ago
0
Add computed/derived stats for filtering (or creating new columns?)

#829 ihodes opened 8 years ago
0
Short VCFs have tooltips that don't fully appear

#828 tavinathanson opened 8 years ago
0
Make API docs beautiful

#827 ihodes opened 8 years ago
0
Sanity-check and debug pdifftests

#826 armish closed 8 years ago
2
Make true pos count agree with true pos checks

#825 ihodes closed 8 years ago
5
Drag & drop VCF upload doesn't work on Firefox

#824 ihodes opened 8 years ago
0
Add documentation re: basic auth for API.

#823 ihodes closed 8 years ago
4
VCF comparison table showing incorrect results

#822 jaclynperrone closed 8 years ago
3
Fail responsibly when dealing with VCF files without headers

#821 armish opened 8 years ago
1
Instead of forcing a default ENSEMBL release, infer it from the VCF via varcode

#820 armish closed 8 years ago
3
Suggest using UTC timezone for better compatibility with timestamps

#819 armish closed 8 years ago
22
Fix VCF download feature

#818 armish closed 8 years ago
6
Rename and move Bootstrap files in a single step

#817 armish closed 8 years ago
3
Varcode worker: infer the correct ENSEMBL release from the VCF file if possible

#816 armish closed 8 years ago
0