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When I tried hd_wsi on WSI inference with --save_images, this error occurred.
```
TypeError: write() got an unexpected keyword argument 'compress'
```
Additionally, In order to resolve this, I…
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Hi. Thanks for sharing the wonderful work. In your paper (Prediction of HER2-positive breast cancer recurrence and metastasis risk from histopathological images and clinical information via multimodal…
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How Can I add a new wsi format ‘sdpc’?
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Hi, I would like to know, when calculating the similarity matrix for image-text similarity in Graph Prompt Tuning, is the similarity score calculated between each patch and individual sub-descriptions…
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Hi, Thanks for sharing this inspiring work :)
Could you please share the steps and criteria in the preprocessing in this project? For example, the preset parameters used for CLAM preprocessing, and…
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Hi.
I'm performing manipulations on WSIs and saving intermediate results in HDF5.
The end results are being saved to a new WSI using `pyvips.Image.new_from_array`.
However when running on very la…
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`
## Stage 1: WSI features and Genomic features fusion
for stage1_layer in self.stage1_layers: # 1
stage1_output, omic_wsi_mgca = stage1_layer(wsi_feats_embed, omic_feats_embed,…
Ge-YL updated
2 months ago
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We need to create a module for WSI as addition to FairGenomes.
- [ ] Create a schema for WSI data (what metadata we have, or want to collect)
- [ ] Connect with **Petr Holub** and **Rudolf Nenutil** …
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When a program uses DXVK-Native, currently it must set the environment variable `DXVK_WSI_DRIVER=SDL2` or similar, as documented in the README. This can be done by a wrapper script, or by calling `set…
smcv updated
2 months ago
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the inference code starts with `./cell_segmentation/inference/cell_detection.py` but no such python file in the project.
and the only file named with similar struct `./nuclei_detection/inference/nucl…