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This is still todo, correct? @MxMstrmn
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On LINCS we have some problems with evaluations resulting in strange [0.0, 0.0, 0.0] results. There is this line:
https://github.com/theislab/chemical_CPA/blob/main/compert/train.py#L68
So proba…
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In LINCS we have 979 genes, in Trapnell there are 5000. However the naive overlap (via plain text matching) is only 89. We have to define & implement a strategy for dealing with this during the transf…
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As dimensions have been added to core fact, a new submission can generate too many permutations and erase the performance improvements gained by pre-aggregating c2m2 entities into equivalence classes.…
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**Describe the bug**
Hello,
I'm trying to generate a spectral library from Thermo DDA runs. I'm running FragPipe in headless mode in Linux with a workflow copied from the GUI to include spectral l…
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2000 instead of the current 977 genes
Part of #76
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Get the combination dataset from Alex for checking drug interaction (synergetic, etc.) and curate the data
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- [ ] Lincs vs Trapnell have different number of genes: ~970 genes in LINCS, 5000 genes in Trapnell. How do we deal with this? We could add another layer to the encoder & decoder for finetuning. We co…
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Dear BioSimSpace Developers:
Recently I found that the `.top` file would change after `_add_position_restraints` during Gromacs setup, which would make the simulation fail to proceed. https://github…
kexul updated
2 years ago
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The package is still returning a test error message to be shown on the map. A point in London.
But it doesn't show on the map. I would like to add more to this feature, but not point until they ap…
mem48 updated
2 years ago