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Commnd：“python3 tools/Scripts/GFF_extract_features.py -g mmpt_1.fa -a R1.stringtie.transdecoder.gff3 -p R1.stringtie.transdecoder.clean > R1.stringtie.transdecoder.clean.log”
Error： File "/public/…
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Hello!
Sorry for all the questions, I just really appreciate your pipeline, especially for annotating the genomes of poorly characterized species. It's great to be able to combine so much evidence!…
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**I'm submitting a...**
- [ ] bug report
- [ ] feature request
## Current Behavior
I installed the [conda compiler tools](https://conda.io/docs/user-guide/tasks/build-packages/comp…
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Hi,
I got many errors when i run "make
Running example in $...
make[1]: Entering directory `/home/guochuanxu/bio/TransDecoder-TransDecoder-v5.5.0/sample_data/cufflinks_example'
./runMe.sh in…
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Hello, I'm comparing another publications' assembly and annotation to my own. They provide 4 files:
1. assembly.fasta
2. annotation.gff3
3. CDS.fasta
4. Protein.fasta
The strange thing about th…
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I.e. ORFs that contain both a start and stop codon?
I couldn't find any information about this in the documentation.
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Hello all!
I'm trying to run Trinity utility align_and_estimate_abundance.pl with the following command:
`nohup /home/raperez/sw/TRINITY_v2.8.4/trinityrnaseq-Trinity-v2.8.4/util/align_and_estimate…
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Hello,
I have tried to run eukcc on a protein dataset but I got this error:
eukcc --db /home1/datawork/gchevign/Data.dir/eukcc_db.dir/eukccdb/ --outdir /home1/datawork/gchevign/Bonamia_RNAseq.di…
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Hi,
I'm running TransDecoder (v 5.5.0) on a Trinity (v 2.13.2) transcriptome assembly. The TransDecoder.LongOrfs script works fine, but I'm running into problems with TransDecoder.Predict. The rele…
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**Are you using the latest release?**
Yes
**Describe the bug**
I am using the latest Docker image for funannotate (with Singularity) on a university computing cluster. However, PASA throws the fo…