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Hello
A quick query regarding tutorial: https://microbiome.github.io/tutorials/Core.html
I can't understand fully how we can select core microbiota at 50% prevalence? what does this mean?
Does t…
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### System details
RStudio Edition : Desktop
RStudio Version : 2022.02.1 Build 461
OS Version : Ubuntu 21.10
R Version : 4.1.2 (2021-11-01)
### Steps to reproduce t…
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Figure out how to accept studies that include both human and animal samples
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Hi friends:
I downloaded 'mbodymap_species_to_samples_relative_abundance.csv' from the ***Help*** panel of the website of ***mBodymap*** [link](https://mbodymap.microbiome.cloud/Downloads/mbodymap_…
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Tutorial example "adjusting_taxumap_parameters" does not work. An error occurs when parsing the input. The strings provided to the example data ("example_data/taxonomy.csv") appear not to be parsed c…
jsevo updated
2 years ago
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At least a brief introduction about primers, amplification, library generation... It is kind of basic but it is important later for the discussion on microbiota and comparing multiple microbiome datas…
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- Repository: https://github.com/BiotechPedro/microSTASIS
- Additional important correspondence: The former version of the package was
submitted to CRAN one year ago. Therefore, there is an err…
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Hello!
Didn't see this described anywhere, so I figure I might drop some references for potential further research.
Anyway: probiotics combined with prebiotics seems to be a nascent field of re…
cblgh updated
2 years ago
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Hi! Thank you for your package.
We have some stools samples and using decontam package as we observe some taxa inside our negative controls (extraction controls).
We followed the steps in this …
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Dear Prof. Perez-Lamarque,
Thank you very much for providing this function.
When I ran Simulation and Empirical application using the same codes as introduced in HOME Tutorial and showed in Examples…