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Hi Tianshi,
I was trying to run your pipeline on the example data and I run into the following error:
```
java -Djava.io.tmpdir=../test_results//tumor/tmp -jar /mnt/home/icb/laura.martens/QBRCpip…
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For some studies, the total number of cases in the cancer summary plot does not match the total number for the cancer type in study view.
We can reproduce the error by:
1. Go to the [CCLE Broad…
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Hi,
Recently I am working on CNV analysis with CNVkit tool.
For now, I analyse CNV without use gender parameter. So if my sample come from a woman, my results include loss of Y chromosome. This …
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Home Page:
- [x] Blurb (further detailed in about) (Slack Barry or Mike): needs text. Method, Assay, Glossary, etc
- [x] Change the blurb on front page from using bold to highlight the letters in …
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I am trying to demultiplex tumor samples using genotype data from healthy cells, and demuxlet is calling the majority of my tumor cells doublets. I'm looking for any insight about whether somatic muta…
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See this paper: http://www.nature.com/nbt/journal/v31/n3/abs/nbt.2514.html
(and the supplementary information) for details.
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Dear infercnv developers,
Hi.
I have a problem when using "runCnvAnalysis" function of SPATA2.
So, I would appreciate it if you let me know if there is a solution.
spata_bm1
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![image](https://user-images.githubusercontent.com/72878144/222640920-bf0404a4-7ce3-4cae-9793-cd2d7cf57b0c.png)
I'm trying to reproduce the result of a comparison, which is its standard answer.
I us…
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Hi,
I am using ViT-H_14 pre-trained to perform binary classification of biomedical images. The dataset I have available is very small: I use about 300 images to perform fine tuning and about 30 image…