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fasta: http://gannet.fish.washington.edu/Atumefaciens/20190102_metagenomics_geo_megahit/megahit_out/final.contigs.fa
then use coverage file
http://gannet.fish.washington.edu/Atumefaciens/20190102…
sr320 updated
5 years ago
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http://sourceforge.net/p/samtools/mailman/message/33164920/
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## Version of Integron_Finder:
```
integron_finder version 2.0rc5
Using:
- Python 3.7.1 | packaged by conda-forge | (default, Nov 13 2018, 18:15:35) [GCC 4.8.2 20140120 (Red Hat 4.8.2-15)]
…
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Hello NF-core team,
I am wondering if it would be possible to add a column on `ENSEMBL_GENE_NAME` to `merged_gene_counts.txt` file (output of featureCounts) in addition to already existing `ENSEMBL…
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Hi there and thanks for maintaining the library.
Since version 1.71 and pull request #1497, FeatureLocation will throw an error if its ``end`` parameter is lower than it's ``start``. The problem i…
Zulko updated
5 years ago
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There is already `@Citation` annotation created for `BEASTObject`, to link the publication to the model and implementation.
I created `PackageCitations` to pull out all citations from installed pac…
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Following #1507 ... we need to ensure that the previous `disclosure.pdf` files that have been generated in production are fixed/recreated to be correct. This may entail creating a script.
Currently…
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What do you consider the five most relevant BedTools commands based on your research interest?
Please list them and indicate what each one does.
sr320 updated
5 years ago
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Hi Google Hackers,
I am just curious, can I use this to investigate SNP in between different bacteria genomes?
Thanks,
Eddi
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Hi David,
I was running orthofinder for ~900 bacteria genomes. The command was
python orthofinder.py -f pep -t 32 -a 16 -1 -og -S diamond
I think the diamond blast part was perfectly done. How…